PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04068g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 539aa    MW: 57750.5 Da    PI: 7.5984
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04068g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.85.4e-401482533114
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                               + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLl qa+pai+++tgt++++a+++  + s++ss+s+ s
  Niben101Scf04068g00003.1 148 PPKKQTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLHQAEPAIIAATGTGTIPANFStLNISHRSSGSTLS 232
                               56899***************************************************************99966666666666333 PP

                       TCP  87 sgkaaksaakskksqksaasalnlakes 114
                               ++       +sk++++s ++al+la+ +
  Niben101Scf04068g00003.1 233 AP-------PSKSAPHSFHNALALAAAH 253
                               33.......4444444444444444433 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.9E-38152248IPR005333Transcription factor, TCP
PROSITE profilePS5136927.791153207IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MELSDLQNNN TNSTSKQNNN TTSTTNTAPS QPLHHQHQHQ YQLLSHHFQQ QHGRSSVPFM  60
TSISIQPSAP PGLTNASPTP TAATSASPST SSPTPPSKQQ PPHLVDASLA IATRSESLID  120
SNKKSQPQQQ QLAIQQTQPV QQQLQTQPPK KQTKDRHTKV DGRGRRIRMP AACAARVFQL  180
TRELGHKSDG ETIEWLLHQA EPAIIAATGT GTIPANFSTL NISHRSSGST LSAPPSKSAP  240
HSFHNALALA AAHHPSHPFE EGFSHMLGFH QNPHLLTANP IAESIQGGGG GVSSGDGGGG  300
QEGTENYLRK RYREDLFKEE GSSNPQGEAS GGSSSPSNKQ FKGNSSQLPK PSQEAVAGPS  360
AASMLRHTNM MPATGLWAVA PPPTSGTTGS PFWMLPVNAS GSGQTLSAPM ASTSGTTTLE  420
SQMWPFPMGS SNTMQAPLHF MPRFNIPTNL EFQSGRGNPL QLGSMLMQQQ QHQQQPSQHL  480
GLGMSESNLG MLAALNAYSR SGLNMNSDHQ SHSLEHHQQH QQHQPQPADS EDDDPNNSQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795828.10.0PREDICTED: transcription factor TCP8-like
TrEMBLG3BGV10.0G3BGV1_SOLLC; TCP transcription factor 11
STRINGPGSC0003DMT4000641640.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114842125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.13e-54TCP family protein